Weave

``Weave allows to produce dynamic documents where the script that produce the output is embedded directly in the document, with optionally only the output rendered.

Save the document below in a file with extension jmd (e.g. testWeave.jmd)

---
title : Test of a document with embedded Julia code and citations
date : 5th September 2018
bibliography: biblio.bib
---
​
​
# Section 1 (leave two rows from document headers)
​
This is a strong affermation that needs a citation [see @Lecocq:2011, pp. 33-35; @Caurla:2013b, ch. 1].
​
@Lobianco:2016b [pp. 8] affirms something else.
​
## Subsection 1.1
​
This should print a plot. Note that I am not showing the source code in the final PDF:
​
```{julia;echo=false}
using Plots
pyplot()
plot(sin, -2pi, pi, label="sine function")

Here instead I will put in the PDF both the script source code and the output:

using DataFrames
df = DataFrame(
         colour = ["green","blue","white","green","green"],
         shape  = ["circle", "triangle", "square","square","circle"],
         border = ["dotted", "line", "line", "line", "dotted"],
         area   = [1.1, 2.3, 3.1, missing, 5.2]
    )
df

Note also that I can refer to variables defined in previous chunks (or "cells", following Jupyter terminology):

df[:colour]

Subsubsection

For a much more complete example see the Weave documentation.

References

```

You can then "compile" the document (from within Julia) with:

using Weave; weave("testWeave.jmd", out_path = :pwd, doctype = "pandoc2pdf")

To obtain the following pdf:

In Ubuntu Linux (but most likely also in other systems), weave needs pandora and LaTeX (texlive-xetex ) already installed in the system. If you use Ununtu, the version of pandora in the official repositories is too old. Use instead the deb available in https://github.com/jgm/pandoc/releases/latest .

While an updated, expanded and revised version of this chapter is available in "Chapter 11 - Utilities" of Antonello Lobianco (2019), "Julia Quick Syntax Reference", Apress, this tutorial remains in active development.